R

R Packages

available on the CRAN and for some of them on GitHub.

• CHMM: An exact and a variational inference for Coupled Hidden Markov Models applied to the joint detection of copy number variations.

• cobiclust: Biclustering via Latent Block Model Adapted to Overdispersed Count Data.

  cobiclust: Erysiphe alphitoides pathobiome tutorial

Other R packages

• anapuce: Tools for microarray data analysis.

• MixThres: mixture model of truncated gaussians to detect a hybridization threshold for microarray data.