R projects

CRAN Task View Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

I maintain with Nathalie Vialaneix and Toby Dylan Hocking the CRAN Task View (CTV): Genomics, Proteomics…

R package rda - Ridge Redundancy Analysis for High-Dimensional Omics Data

Package developed with Tristan Mary-Huard and Hayato Yoshioka and available on INRAE GitLab forge and CRAN

R-package PLNmodels

A collection of Poisson LogNormal models for multivariate count data analysis

R-packages for Stochastic Blockmodels

sbm: J. Chiquet, S. Donnet & P. Barbillon. R-package for Stochastic Blockmodels. Available github or CRAN

StateOftheR

StateoftheR is a network of researchers and engineers from the MathNum department who meet to deepen their know-how…

scimo - Extra Recipes Steps for Dealing with Omics Data

Package developed by Antoine Bichat and available on Github and CRAN